Package: airr 1.6.1

airr: AIRR Data Representation Reference Library

Schema definitions and read, write and validation tools for data formatted in accordance with the AIRR Data Representation schemas defined by the AIRR Community <https://docs.airr-community.org>.

Authors:Jason Vander Heiden [aut, cre], Susanna Marquez [aut], Scott Christley [aut], Katharina Imkeller [aut], Ulrik Stervbo [aut], Gisela Gabernet [aut], AIRR Community [cph]

airr_1.6.1.tar.gz
airr_1.6.1.zip(r-4.7)airr_1.6.1.zip(r-4.6)airr_1.6.1.zip(r-4.5)
airr_1.6.1.tgz(r-4.6-any)airr_1.6.1.tgz(r-4.5-any)
airr_1.6.1.tar.gz(r-4.7-any)airr_1.6.1.tar.gz(r-4.6-any)
airr_1.6.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
airr/json (API)
NEWS

# Install 'airr' in R:

install.packages('airr', repos = c('https://javh.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/airr-community/airr-standards/issues

On CRAN:

5.63 score 10 packages 136 scripts 2.1k downloads 20 exports 27 dependencies

Last updated from:761a41923e. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	133
source / vignettes	OK	181
linux-release-x86_64	OK	121
macos-release-arm64	OK	162
macos-oldrel-arm64	OK	156
windows-devel	OK	109
windows-release	OK	161
windows-oldrel	OK	108
wasm-release	OK	108

Exports:AIRRSchema AlignmentSchema DataFileSchema GenotypeSetSchema GermlineSetSchema InfoSchema load_schema read_airr read_alignment read_rearrangement read_tabular RearrangementSchema RepertoireSchema validate_airr validate_rearrangement validate_tabular write_airr write_alignment write_rearrangement write_tabular

Dependencies:bit bit64 cli clipr cpp11 crayon glue hms jsonlite lifecycle magrittr pillar pkgconfig prettyunits progress R6 readr rlang stringi tibble tidyselect tzdb utf8 vctrs vroom withr yaml

AIRR Data Representation Reference Library Usage

The AIRR Community

Rendered fromUsage-Vignette.Rmdusingknitr::rmarkdownon May 20 2026.

Last update: 2026-02-18
Started: 2018-05-03

Citation

Readme and manuals

Help Manual

Help page	Topics
Example AIRR data	ExampleData
Load a schema definition	load_schema
Read an AIRR Data Model file in YAML or JSON format	read_airr
Read AIRR tabular data	read_alignment read_rearrangement read_tabular
S4 class defining an AIRR standard schema	$,Schema-method AIRRSchema AlignmentSchema DataFileSchema GenotypeSetSchema GermlineSetSchema InfoSchema names,Schema-method RearrangementSchema RepertoireSchema Schema Schema-class Schema-method [,Schema,character-method
Validate an AIRR Data Model nested list representation	validate_airr
Validate tabular AIRR data	validate_rearrangement validate_tabular
Write AIRR Data Model records to YAML or JSON files	write_airr
Write an AIRR tabular data	write_alignment write_rearrangement write_tabular