Package: airr 1.5.0
airr: AIRR Data Representation Reference Library
Schema definitions and read, write and validation tools for data formatted in accordance with the AIRR Data Representation schemas defined by the AIRR Community <http://docs.airr-community.org>.
Authors:
airr_1.5.0.tar.gz
airr_1.5.0.zip(r-4.5)airr_1.5.0.zip(r-4.4)airr_1.5.0.zip(r-4.3)
airr_1.5.0.tgz(r-4.4-any)airr_1.5.0.tgz(r-4.3-any)
airr_1.5.0.tar.gz(r-4.5-noble)airr_1.5.0.tar.gz(r-4.4-noble)
airr_1.5.0.tgz(r-4.4-emscripten)airr_1.5.0.tgz(r-4.3-emscripten)
airr.pdf |airr.html✨
airr/json (API)
NEWS
# Install 'airr' in R: |
install.packages('airr', repos = c('https://javh.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/airr-community/airr-standards/issues
Last updated 1 years agofrom:81a893aee9. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 21 2024 |
R-4.5-win | OK | Nov 21 2024 |
R-4.5-linux | OK | Nov 21 2024 |
R-4.4-win | OK | Nov 21 2024 |
R-4.4-mac | OK | Nov 21 2024 |
R-4.3-win | OK | Nov 21 2024 |
R-4.3-mac | OK | Nov 21 2024 |
Exports:AIRRSchemaAlignmentSchemaDataFileSchemaGenotypeSetSchemaGermlineSetSchemaInfoSchemaload_schemaread_airrread_alignmentread_rearrangementread_tabularRearrangementSchemaRepertoireSchemavalidate_airrvalidate_rearrangementvalidate_tabularwrite_airrwrite_alignmentwrite_rearrangementwrite_tabular
Dependencies:bitbit64clicliprcpp11crayonfansigluehmsjsonlitelifecyclemagrittrpillarpkgconfigprettyunitsprogressR6readrrlangstringitibbletidyselecttzdbutf8vctrsvroomwithryaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Example AIRR data | ExampleData |
Load a schema definition | load_schema |
Read an AIRR Data Model file in YAML or JSON format | read_airr |
Read AIRR tabular data | read_alignment read_rearrangement read_tabular |
S4 class defining an AIRR standard schema | $,Schema-method AIRRSchema AlignmentSchema DataFileSchema GenotypeSetSchema GermlineSetSchema InfoSchema names,Schema-method RearrangementSchema RepertoireSchema Schema Schema-class Schema-method [,Schema,character-method |
Validate an AIRR Data Model nested list representation | validate_airr |
Validate tabular AIRR data | validate_rearrangement validate_tabular |
Write AIRR Data Model records to YAML or JSON files | write_airr |
Write an AIRR tabular data | write_alignment write_rearrangement write_tabular |