Introduction | AIRR Data Standards | Reading AIRR formatted files | Reading Rearrangements | Reading AIRR Data Models | Writing AIRR formatted files | Writing Rearrangements | Writing AIRR Data Models | Validating AIRR data structures | References
Package: airr 2.0.0
airr: AIRR Data Representation Reference Library
Schema definitions and read, write and validation tools for data formatted in accordance with the AIRR Data Representation schemas defined by the AIRR Community <https://docs.airr-community.org>.
Authors:
airr_2.0.0.tar.gz
airr_2.0.0.zip(r-4.7)airr_2.0.0.zip(r-4.6)airr_2.0.0.zip(r-4.5)
airr_2.0.0.tgz(r-4.6-any)airr_2.0.0.tgz(r-4.5-any)
airr_2.0.0.tar.gz(r-4.7-any)airr_2.0.0.tar.gz(r-4.6-any)
airr_2.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
airr/json (API)
| # Install 'airr' in R: |
| install.packages('airr', repos = c('https://javh.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/airr-community/airr-standards/issues
Last updated from:46e4ea1e9d. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 153 | ||
| source / vignettes | OK | 213 | ||
| linux-release-x86_64 | OK | 147 | ||
| macos-release-arm64 | OK | 165 | ||
| macos-oldrel-arm64 | OK | 158 | ||
| windows-devel | OK | 136 | ||
| windows-release | OK | 85 | ||
| windows-oldrel | OK | 91 | ||
| wasm-release | OK | 123 |
Exports:AIRRSchemaDataFileSchemaGenotypeSetSchemaGermlineSetSchemaInfoSchemaload_schemaread_airrread_rearrangementread_tabularRearrangementSchemaRepertoireSchemavalidate_airrvalidate_rearrangementvalidate_tabularwrite_airrwrite_rearrangementwrite_tabular
Dependencies:bitbit64clicliprcpp11crayongluehmsjsonlitelifecyclemagrittrpillarpkgconfigprettyunitsprogressR6readrrlangstringitibbletidyselecttzdbutf8vctrsvroomwithryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Example AIRR data | ExampleData |
| Load a schema definition | load_schema |
| Read an AIRR Data Model file in YAML or JSON format | read_airr |
| Read AIRR tabular data | read_rearrangement read_tabular |
| S4 class defining an AIRR standard schema | $,Schema-method AIRRSchema DataFileSchema GenotypeSetSchema GermlineSetSchema InfoSchema names,Schema-method RearrangementSchema RepertoireSchema Schema Schema-class Schema-method [,Schema,character-method |
| Validate an AIRR Data Model nested list representation | validate_airr |
| Validate tabular AIRR data | validate_rearrangement validate_tabular |
| Write AIRR Data Model records to YAML or JSON files | write_airr |
| Write an AIRR tabular data | write_rearrangement write_tabular |
